Upcoming data
From VectorBase Development Wiki
Contents |
IMBB
- An update of Jose's Ribeiro AnoXcel will be available by the end of October.
EBI
Plans for data prep and release – Spring/Summer 2009
These are intentions, not firm promises at this stage.
- With possible consequences for other groups ….
late May/early June
Aedes revised build2 gene set (incorporation of community annotation, suppl. set etc)
Anopheles final build5 gene set
Pediculus gene set (new)
Culex (patch core database to e! v54)
EBI update EST/mRNA & protein mappings to genome for all 3 mosquitoes
EBI complete xref /other analysis (processes that do not change gene sets)
- Imperial run oligo/array analysis (mapping array probes to gene predictions)
- ND ready with v54 browser
late June/July ?
EBI run compara analysis with 5 gene sets
Updated Anopheles & Aedes sets to GenBank
Anopheles ‘old’ community data all into VB CAP
- ND work out how to link to CAP from genes in browser
- ND release all genomes & new compara in e! v54
Subsequently
- ND makes BioMarts for all species ?
Imperial
Arrays
back up databases.
clear expression summary cache
Given that we have ensembl dbs containing oligo probe features (see above) we need to rerun get_array_annotation_base.pl on the morning of the public release (on the VB genome browsers).
Re-index search indices.
fill gene summary cache
back up databases.
Array data
Make public any experiments that rely on newly included array designs. backup BASE
Expression BioMart
If we have one, rebuild it.
