VectorBase Development Wiki:Community Portal

From VectorBase Development Wiki

VectorBase Project Related Links and Resources

VectorBase Homepage

AnoEST: Anopheles gambiae genomics

Aedes aegypti EST clustering and annotation à la AnoEST

AnoBase: The Anopheles Database

Ensembl

• Anopheles gambiae
• Aedes aegypti

Archives for the "Everyone" VectorBase MailList

Archives for the "VectorBase Development Announcements" MailList

NIAID Bioinformatics Resource Centers for Biodefense and Emerging or Re-Emerging Infectious Diseases

• Original Solicitation: File:RFP0434-0.pdf
• BRC Kick-Off Meeting, October 13-14, 2004
  • Slides: VectorBase: A Relational Bioinformatics Resource Center for Arthropod Vectors of Human Pathogens, Frank Collins: File:BRC1 Collins.pdf
• BRC2 and Inter Operability Working Group (IOWG) Meeting, May 16-18, 2005
  • Slides: Strategies for Manual Annotation of the Anopheles Genome, Kathryn Campbell: File:Brc2 birney.pdf
• BRC3 and Inter Operability Working Group (IOWG) Meeting, February 6-7, 2006
  • Slides: Annotation of vector genomes: The Aedes aegypti model, Daniel Lawson and Frank Collins: File:BRC3 LawsonCollins vectorbase.pdf
  • Slides: VectorBase - BRC Outreach to Date, Frank Collins: File:BRC3 CollinsOutreachToDate.pdf
• BRC4 Meeting, December 7-8, 2006
  • Slides: The evolving VectorBase gene build: mixing automated and manual approaches when annotating vector genomes, Daniel Lawson File:BRC4 VB hot.ppt
    • MP3 Recording: BRC4_VB_hot.mp3
  • Slides: VectorBase annotation metrics, Daniel Lawson, BRC4_AWG.ppt
• BRC5 Meeting, November 8 – 9, 2007
  • Slides: Variation data in VectorBase, Daniel Lawson, BRC5_variation.ppt
• BRC6 Meeting, October 28 – 29, 2008
  • Slides: Collective annotation of the Ixodes scapularis genome: VectorBase, MSCs and the tick community, Dan Lawson, BRC6_Lawson.ppt
    • MP3 Recording: DanBRC6.mp3
  • Slides: Anopheles gambiae PopGenBase, Yoosook Lee, AgPopGenBase.ppt
    • MP3 Recording: YoosookBRC6.mp3

BRC Central

Other NIAID BRCs

ApiDB -- Apicomplexan database portal to several sites including Toxoplasma gondii, Cryptosporidium parvum.

BioHealthBase -- The Biodefense/Public Health DataBase focuses on data about six priority pathogens to help fill in gaps in genomic and other data critical to scientific researchers. The six pathogens are: Giardia lamblia parasite, Mycobacterium tuberculosis, Influenza virus, Francisella Tularensis, Microsporidia parasites and Ricinus communis (castor bean).

ERIC -- Enteropathogen Resource Integration Center resource for five members of the family Enterobacteriaceae including: Diarrheagenic E. coli, Shigella, Salmonella, Yersinia enterocolitica, Yersinia pestis.

NMPDR -- National Microbial Pathogen Data Resource Center the physiology of the pathogens, to clarify the detailed variations that determine phenotype, and to develop consistent interpretations of functional data with special focus on Staphylococcus aureus, pathogenic vibrios, Listeria monocytogenes, Campylobacter jejuni, Streptococcus pyogenes, and Streptococcus pneumoniae.

Pathema -- functional assignments, metabolic reconstructions and transporters for: Bacillus anthracis, Clostridium botulinum, Burkholderia mallei, Burkholderia pseudomallei, Clostridium perfringens and Entamoeba histolytica.

PATRIC -- PathoSystems Resource Integration Center providing a comprehensive and accurate web-based resource for genomic and associated information on a number of important human pathogens including Brucella, Coxiella burnetii, Rickettsia, and the following viruses: Caliciviruses, Coronaviruses, Hepatitis A, Hepatitis E and Rabies.

VBRC -- Viral Bioinformatics Resource Center encompassing the viral families: Arenavirdae, Bunyaviridae, Flaviviridae, Filoviridae, Paramyxoviridae, Poxviridae, and Togaviridae.